| Standings | P | W | D | L | GD | PTS | |
|---|---|---|---|---|---|---|---|
| 1 | Strasbourg | 3 | 3 | 0 | 0 | 3 | 9 |
| 2 | Rakow Czestochowa | 3 | 1 | 2 | 0 | 1 | 5 |
| 3 | AEK Athens | 3 | 2 | 0 | 1 | 0 | 6 |
| 4 | Sparta Praha | 3 | 2 | 0 | 1 | 1 | 6 |
| 5 | Rayo Vallecano | 3 | 1 | 1 | 1 | 0 | 4 |
| 6 | Shakhtar Donetsk | 3 | 3 | 0 | 0 | 4 | 9 |
| 7 | Mainz 05 | 3 | 1 | 1 | 1 | 0 | 4 |
| 8 | AEK Larnaca | 3 | 1 | 2 | 0 | 1 | 5 |
| 9 | Lausanne | 3 | 1 | 1 | 1 | -1 | 4 |
| 10 | Crystal Palace | 3 | 2 | 0 | 1 | 4 | 6 |
| 11 | Lech Poznan | 3 | 1 | 0 | 2 | -1 | 3 |
| 12 | Samsunspor | 3 | 1 | 1 | 1 | -1 | 4 |
| 13 | NK Celje | 3 | 1 | 0 | 2 | -2 | 3 |
| 14 | AZ Alkmaar | 3 | 1 | 0 | 2 | -3 | 3 |
| 15 | Fiorentina | 3 | 1 | 0 | 2 | 1 | 3 |
| 16 | Rijeka | 3 | 0 | 2 | 1 | -1 | 2 |
| 17 | Jagiellonia Bialystok | 3 | 0 | 3 | 0 | 0 | 3 |
| 18 | Omonia Nicosia | 3 | 1 | 2 | 0 | 1 | 5 |
| 19 | FC Noah | 3 | 0 | 2 | 1 | -2 | 2 |
| 20 | Drita | 3 | 1 | 1 | 1 | -2 | 4 |
| 21 | KuPS | 3 | 0 | 2 | 1 | -1 | 2 |
| 22 | KF Shkendija | 3 | 0 | 0 | 3 | -4 | 0 |
| 23 | Zrinjski Mostar | 3 | 0 | 0 | 3 | -8 | 0 |
| 24 | Sigma Olomouc | 3 | 1 | 0 | 2 | -2 | 3 |
| 25 | Universitatea Craiova | 3 | 1 | 0 | 2 | -2 | 3 |
| 26 | Lincoln Red Imps FC | 3 | 0 | 0 | 3 | -10 | 0 |
| 27 | Dynamo Kyiv | 3 | 0 | 0 | 3 | -6 | 0 |
| 28 | Legia Warszawa | 3 | 1 | 0 | 2 | -1 | 3 |
| 29 | Slovan Bratislava | 3 | 0 | 0 | 3 | -5 | 0 |
| 30 | Breidablik UBK | 3 | 0 | 0 | 3 | -7 | 0 |
| 31 | Shamrock Rovers | 3 | 0 | 1 | 2 | -5 | 1 |
| 32 | Hacken | 3 | 0 | 1 | 2 | -2 | 1 |
| 33 | Hamrun Spartans | 3 | 0 | 0 | 3 | -6 | 0 |
| 34 | Shelbourne | 3 | 0 | 1 | 2 | -3 | 1 |
| 35 | Aberdeen | 3 | 0 | 1 | 2 | -9 | 1 |
| 36 | Rapid Wien | 3 | 0 | 1 | 2 | -6 | 1 |
- Advance to round of 16
- Advance to knockout phase play-offs