| Standings | P | W | D | L | GD | PTS | |
|---|---|---|---|---|---|---|---|
| 1 | FC Zlin | 30 | 21 | 8 | 1 | 31 | 71 |
| 2 | MFK Chrudim | 30 | 15 | 8 | 7 | 17 | 53 |
| 3 | Vyskov | 30 | 12 | 10 | 8 | 9 | 46 |
| 4 | FC Silon Taborsko | 30 | 11 | 8 | 11 | 4 | 41 |
| 5 | Sparta Prague B | 30 | 10 | 10 | 10 | 2 | 40 |
| 6 | FC Vlasim | 30 | 9 | 13 | 8 | 4 | 40 |
| 7 | FC Zbrojovka Brno | 30 | 9 | 12 | 9 | -2 | 39 |
| 8 | SK Artis Brno | 30 | 9 | 12 | 9 | -4 | 39 |
| 9 | Zizkov | 30 | 11 | 6 | 13 | 2 | 39 |
| 10 | Vysocina Jihlava | 30 | 8 | 13 | 9 | -4 | 37 |
| 11 | Slavia Prague B | 30 | 9 | 10 | 11 | 4 | 37 |
| 12 | SK Prostejov | 30 | 9 | 10 | 11 | -11 | 37 |
| 13 | Opava | 30 | 9 | 9 | 12 | -10 | 36 |
| 14 | Banik Ostrava B | 30 | 9 | 7 | 14 | -11 | 34 |
| 15 | FK Varnsdorf | 30 | 8 | 8 | 14 | -8 | 32 |
| 16 | Sigma Olomouc B | 30 | 6 | 6 | 18 | -23 | 24 |