| Standings | P | W | D | L | GD | PTS | |
|---|---|---|---|---|---|---|---|
| 1 | FK TransINVEST | 30 | 26 | 1 | 3 | 64 | 79 |
| 2 | Neptunas Klaipeda | 30 | 21 | 4 | 5 | 41 | 67 |
| 3 | FK Tauras Taurage | 30 | 18 | 8 | 4 | 34 | 62 |
| 4 | Babrungas | 30 | 17 | 7 | 6 | 21 | 58 |
| 5 | BFA | 30 | 16 | 7 | 7 | 11 | 55 |
| 6 | FK Atmosfera | 30 | 14 | 5 | 11 | 17 | 47 |
| 7 | Lietava Jonava | 30 | 11 | 10 | 9 | 2 | 43 |
| 8 | Zalgiris Vilnius B | 30 | 11 | 9 | 10 | 2 | 42 |
| 9 | FK Minija | 30 | 11 | 3 | 16 | -19 | 36 |
| 10 | Hegelmann II | 30 | 9 | 6 | 15 | -15 | 33 |
| 11 | Be1 NFA | 30 | 8 | 6 | 16 | -15 | 30 |
| 12 | Ekranas | 30 | 9 | 2 | 19 | -21 | 29 |
| 13 | Nevezis | 30 | 7 | 5 | 18 | -26 | 26 |
| 14 | FA Siauliai II | 30 | 8 | 2 | 20 | -30 | 26 |
| 15 | FK Kauno Zalgiris B | 30 | 7 | 4 | 19 | -15 | 25 |
| 16 | FK Panevezys II | 30 | 6 | 3 | 21 | -51 | 21 |